High performance subgraph mining in molecular compounds

Structured data represented in the form of graphs arises in several fields of the science and the growing amount of available data makes distributed graph mining techniques particularly relevant. In this paper, we present a distributed approach to the frequent subgraph mining problem to discover interesting patterns in molecular compounds. The problem is characterized by a highly irregular search tree, whereby no reliable workload prediction is available. We describe the three main aspects of the proposed distributed algorithm, namely a dynamic partitioning of the search space, a distribution process based on a peer-to-peer communication framework, and a novel receiver-initiated, load balancing algorithm. The effectiveness of the distributed method has been evaluated on the well-known National Cancer Institute’s HIV-screening dataset, where the approach attains close-to linear speedup in a network of workstations

Interfacial instability in turbulent flow over a liquid film in a channel

International audienceWe revisit the stability of a deformable interface that separates a fully-developed turbulent gas flow from a thin layer of laminar liquid. Although this problem has received considerable attention previously, a model that requires no fitting parameters and that uses a base-state profile that has been validated against experiments is, as yet, unavailable. Furthermore, the significance of wave-induced perturbations in turbulent stresses remains unclear. To address these outstanding issues, we investigate this problem and introduce a turbulent base-state velocity that requires specification of a flow rate or a pressure drop only; no adjustable parameters are necessary. This base state is validated extensively against available experimental data as well as the results of direct numerical simulations. In addition, the effect of perturbations in the turbulent stress distributions is investigated, and demonstrated to be small for cases wherein the liquid layer is thin. The detailed modelling of the liquid layer also elicits two unstable modes, 'interfacial' and 'internal', with the former being the more dominant of the two. We show that it is possible for interfacial roughness to reduce the growth rate of the interfacial mode in relation to that of the internal one, promoting the latter, to the status of most dangerous mode. Additionally, we introduce an approximate measure to distinguish between 'slow' and 'fast' waves, the latter being the case for 'critical-layer'-induced instabilities; we demonstrate that for the parameter ranges studied, the large majority of the waves are 'slow'. Finally, comparisons of our linear stability predictions are made with experimental data in terms of critical parameters for onset of wave-formation, wave speeds and wavelengths; these yield agreement within the bounds of experimental error

Abnormal positioning of diencephalic cell types in neocortical tissue in the dorsal telencephalon of mice lacking functional Gli3

The transcription factor Gli3 (glioma-associated oncogene homolog) is essential for normal development of the mammalian forebrain. One extreme requirement for Gli3 is at the dorsomedial telencephalon, which does not form in Gli3(Xt/Xt) mutant mice lacking functional Gli3. In this study, we analyzed expression of Gli3 in the wild-type telencephalon and observed a (high)dorsal-to-(low)ventral gradient of Gli3 expression and predominance of the cleaved form of the Gli3 protein dorsally. This graded expression correlates with the (severe)dorsal-to-(mild)ventral telencephalic phenotype observed in Gli3(Xt/Xt) mice. We characterized the abnormal joining of the telencephalon to the diencephalon and defined the medial limit of the dorsal telencephalon in Gli3(Xt/Xt) mice early in corticogenesis. Based on this analysis, we concluded that some of the abnormal expression of ventral telencephalic markers previously described as being in the dorsal telencephalon is, in fact, expression in adjacent diencephalic tissue, which expresses many of the same genes that mark the ventral telencephalon. We observed occasional cells with diencephalic character in the Foxg1 (forkhead box)-expressing Gli3(Xt/Xt) telencephalon at embryonic day 10.5, a day after the anatomical subdivision of the forebrain vesicle. Large clusters of such cells appear in the Gli3(Xt/Xt) neocortical region at later ages, when the neocortex becomes highly disorganized, forming rosettes comprising mainly neural progenitors. We propose that Gli3 is indispensable for formation of an intact telencephalic-diencephalic boundary and for preventing the abnormal positioning of diencephalic cells in the dorsal telencephalon

Design of a Micro-Aircraft Glider

The goal of this project was to design an aircraft to compete in the micro-class of the 2013 SAE Aero Design West competition. To obtain the lightest possible aircraft, the team chose to construct a glider. The aircraft is completely dependent on potential energy to complete the course, thus a launching system was also developed. Ultimately, the aircraft did not cover the required distance, but significant improvements were made over previous designs. This report details the competition goals and constraints, design process, aircraft configuration, and recommendations for future development

Effects of mixed nitrogen sources on biodegradation of phenol by immobilized Acinetobacter sp. strain W-17

Using Ca-alginate immobilized cells of Acinetobacter sp. strain W-17, the effects of ammonium-N and nitrate-N on the biodegradation of phenol were investigated. Degradation experiments in three different culture media; minimal salts medium (MSM), simulated (SW) and modified simulated wastewater (MSW) were performed. With the freely suspended cells (cell dry weight 0.2 g/l), complete phenol (500 mg/l) degradation was achieved after incubation for 120 h. Using the immobilized cells, the time was reduced to 24 h in MSM medium, and 15 h in the MSW. The results also indicate that strain W-17 can tolerate to high concentrations of NH4+-N (63 mg/l) and NO3--N (1000 mg/l) without a significant loss in the phenol biodegradation rate. Moreover, the presence of 500 mg/l phenol in the MSW had no considerable effect on the removal of both ammonium-N and nitrate-N. Repeated use of immobilized cells revealed that they could be used as much as five times without loss of activity. Our findings could be extended to enhance biotreatment of phenol contamination in a variety of biological treatment processes. (African Journal of Biotechnology: 2003 2(1): 8-12

Analysis of the 5'UTR of HCV genotype 3 grown in vitro in human B cells, T cells, and macrophages

<p>Abstract</p> <p>Background</p> <p>Previously, we have reported the isolation and molecular characterization of human Hepatitis C virus genotype 1 (HCV-1) from infected patients. We are now reporting an analysis of HCV obtained from patients infected with HCV genotype 3 (HCV-3) as diagnosed by clinical laboratories.</p> <p>Results</p> <p>HCV was cultured <it>in vitro </it>using our system. HCV RNA was isolated from patients' blood and from HCV cultured in various cell types for up to three months. The 5'UTR of these isolates were used for comparisons. Results revealed a number of sequence changes as compared to the serum RNA. The HCV RNA produced efficiently by infected macrophages, B-cells, and T-cells had sequences similar to HCV-1, which suggests that selection of the variants was performed at the level of macrophages. Virus with sequences similar to HCV-1 replicated better in macrophages than HCV having a 5'UTR similar to HCV-3.</p> <p>Conclusions</p> <p>Although HCV-3 replicates in cell types such as B-cells, T-cells, and macrophages, it may require a different primary cell type for the same purpose. Therefore, in our opinion, HCV-3 does not replicate efficiently in macrophages, and patients infected with HCV-3 may contain a population of HCV-1 in their blood.</p

Properties and hydration behavior of blended clinker and portland-sediment cement pastes

In recent years, an increase of the interest in the use of secondary raw materials (sediment, sludge…) in construction has been observed.  This paper aims to contribute to the use of dredging sediments in the cement industry. Despite the literature on this subject, the available data on the aspects and phenomena related to the hydration process of such mixtures are incomplete. This paper aims to specify the calorimetric curves of hydration of mixtures made, from the sediment trapped at the site of Lyvet in the Brittany region of France. The mixtures are made ??using in one hand clinker and in the other hand Portland cement. Pastes with 8%, 16% and 33% of clinker or Portland cement substituted by sediment are used to determine the hydraulic properties of mixtures. The physico-chemical characterization of materials is made by different techniques to determine the chemical composition and physical properties. X-ray diffraction is used to determine the mineralogical compositions of samples before and after treatment. A  Tian-Calvet microcalorimeter is used to explore hydration behavior of the blended Sediment-Portland cement pastes. The addition of untreated sediment to both clinker or Portland cement increase the dormant period duration. On the contrary, this period becomes shorter when the sediment is thermally treated. The results show that 8% of treated sediment improve hydration of blended Sediment-Portland cement pastes. Mechanical properties of blended sediment-cements are also investigated. After 28 days of curing in water, the mortar containing 8% of treated sediment exhibits a compressive strength equal to 93.7% of the one of the reference mortar, maintaining it in the same cement class (52.5)